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Neuroinformatics Lab

PUBLICATIONS

papers list
20

A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer's disease

Jinhee Park,Hyerin Kim,Jaekwang Kim,Mookyung Cheon [PLOS Computational Biology 16(7): e1008099   (2020) ]

Abstract
19

Polymorphism of fibrillar structures depending on the size of assembled Abeta17-42 peptides

Mookyung Cheon, Mooseok Kang and Iksoo Chang [Scientific Reports, 6, 38196   (2016) ]

Abstract
18

Structural Conversion of Abeta17-42 Peptides from Disordered Oligomers to U-Shape Protofilaments via Multiple Kinetic Pathways

Mookyung Cheon, Carol K. Hall and Iksoo Chang. [PLOS Computational Biology, 11, e1004258   (2015) ]

Abstract
17

Uncovering Multi Loci-Ordering by Algebraic Property of Laplacian Matrix and its Fiedler Vector.

Mookyung Cheon, Choongrak Kim and Iksoo Chang. [Bioinformatics, 32, 801-807   (2015) ]

Abstract
16

Impact of sequence on the molecular assembly of short amyloid peptides.

Victoria A. Wagoner, Mookyung Cheon, Iksoo Chang and Carol K. Hall. [Proteins: Structure, Function and Bioinformatics, 82, 1469-1483   (2014) ]

Abstract
15

Effects of Macromolecular Crowding on Amyloid Beta (16-22) Aggregation Using Coarse-Grained Simulations.

David C. Latshaw, Mookyung Cheon and Carol K. Hall. [Journal of Physical Chemistry B, 118, 13513-13526   (2014) ]

Abstract
14

Fibrillization Propensity for Short Designed Hexapeptides Predicted by Computer Simulation.

Victoria A. Wagoner, Mookyung Cheon, Iksoo Chang and Carol K. Hall. [Journal of Molecular Biology, 416, 598-609   (2012) ]

Abstract
13

Influence of temperature on formation of perfect tau fragment fibrils using PRIME20/DMD simulations

Mookyung Cheon, Iksoo Chang and Carol K. Hall. [Protein Science, 21, 1514-1527   (2012) ]

Abstract
12

Computer simulation study of amyloid fibril formation by palindromic sequences in prion peptides.

Victoria A. Wagoner, Mookyung Cheon, Iksoo Chang and Carol K. Hall. [Proteins: Structure, Function and Bioinformatics, 79, 2132-2145   (2011) ]

Abstract
11

Spontaneous Formation of Twisted Aβ16-22 Fibrils in Large-Scale Molecular-Dynamics Simulations.

Mookyung Cheon, Iksoo Chang and Carol K. Hall. [Biophysical Journal, 101, 2493-2501   (2011) ]

Abstract
10

Extending the PRIME model for protein aggregation to all 20 amino acids.

Mookyung Cheon, Iksoo Chang, and Carol K. Hall. [Proteins: Structure, Function and Bioinformatics, 78, 2950-2960   (2010) ]

Abstract
9

Cooperative folding kinetics of BBL protein and peripheral subunit-binding domain homologues.

Wookyung Yu, Kwanghoon Chung, Mookyung Cheon, Muyoung Heo, Kyou-Hoon Han, Sihyun Ham, and Iksoo Chang. [Proceeding of The National Academy of Sciences USA, 105, 2397-2402   (2008) ]

Abstract
8

A simple and exact Laplacian clustering of complex networking phenomena: Application to gene expression profiles.

Choongrak Kim, Mookyung Cheon, Minho Kang and Iksoo Chang. [Proceeding of The National Academy of Sciences USA, 105, 4083-4087   (2008) ]

Abstract
7

Calculation of the free energy barriers in the oligomerisation of Abeta peptide fragments.

Mookyung Cheon, Giorgio Favrin, Iksoo Chang, Christopher M. Dobson and Michele Vendruscolo. [Frontiers in Bioscience-Landmark Edition, 13, 5614-22   (2008) ]

Abstract
6

Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid ?brils.

Mookyung Cheon, Iksoo Chang, Sandipan Mohanty, Leila M. Luheshi, Christopher M. Dobson, Michele Vendruscolo and Giorgio Favrin. [PLOS Computational Biology, 3, 1727   (2007) ]

Abstract
5

Perceptron learning of the pairwise contact energies of proteins incorporating amino acids’ environment.

Muyoung Heo, Suhkmann Kim, Eun-Joung Moon, Mookyung Cheon, Kwanghoon Chung, and Iksoo Chang. [Physical Review E, 72, 011906   (2005) ]

Abstract
4

Chain molecule deformation in a uniform ?ow - a computer experiment.

Mookyung Cheon, Iksoo Chang, Joel Koplik, and Jayanth R. Banavar. [EPL-Europhysics Letters, 58, 215   (2002) ]

Abstract
3

Anisotropic Domain Growth of the Axial Next-Nearest-Neighbor Ising Model at Low Temperatures.

Mookyung Cheon and Iksoo Chang. [Physical Review Letters, 86, 4576   (2001) ]

Abstract
2

Fragmentation of Percolation Clusters in General Dimensions.

Mookyung Cheon, Muyoung Heo, Iksoo Chang and Dietrich Stau?er. [Physical Review E, 59, 4733   (1999) ]

Abstract
1

Fragmentation Scaling of Percolation Clusters in Two and Three Dimensions: Large Cell Monte Carlo RG Approach.

Mookyung Cheon and Iksoo Chang. [EPL-Europhysics Letters, 46, 6   (1999) ]

Abstract